Reference

sssom_curator.repository Module

Repository.

add_commands(main, *[, enable_web, ...])

Add parametrized commands.

Repository(*, predictions_path, ...[, ...])

A data structure containing information about a SSSOM repository.

Utilities for generating predictions with lexical predictions.

`append_lexical_predictions`(prefix, ...[, ...])	Add lexical matching-based predictions to the Biomappings predictions.tsv file.
`append_predictions`(new_mappings, *, path[, ...])	Append new lines to the predictions table.
`filter_custom`(mappings, custom_filter)	Filter out custom mappings.
`filter_existing_xrefs`(mappings, prefixes)	Filter predictions that match xrefs already loaded through PyOBO.
`get_predictions`(prefix, target_prefixes, *)	Add lexical matching-based predictions to the Biomappings predictions.tsv file.
`lexical_prediction_cli`(prefix, target, *, path)	Construct a CLI and run it.
`predict_embedding_mappings`(prefix, ...[, ...])	Predict semantic mappings with embeddings.
`predict_lexical_mappings`(prefix, *[, ...])	Iterate over prediction tuples for a given prefix.

A web application for curating predicted semantic mappings.

get_app(*[, target_references, repository, ...])

Get a curation flask app.