Index

Symbols

--all-by-all sssom_curator-predict-lexical command line option --cache sssom_curator-predict-lexical command line option --cutoff sssom_curator-predict-lexical command line option --directory sssom_curator-init command line option --eager-persist sssom_curator-web command line option --filter-mutual-mappings sssom_curator-predict-lexical command line option --force sssom_curator-predict-lexical command line option --force-process sssom_curator-predict-lexical command line option --host sssom_curator-web command line option --identifiers-are-names sssom_curator-predict-lexical command line option --image-directory sssom_curator-summarize command line option --implementation sssom_curator-web command line option --instance sssom_curator-import-ontoportal command line option --live-login sssom_curator-web command line option --mapping-set-title sssom_curator-init command line option --method sssom_curator-predict-lexical command line option --no-cache sssom_curator-predict-lexical command line option --no-open sssom_curator-web command line option --orcid sssom_curator-web command line option --orcid-client-id sssom_curator-web command line option --orcid-client-secret sssom_curator-web command line option

--output-directory sssom_curator-summarize command line option --password sssom_curator-ndex command line option --path sssom_curator command line option --pin-version sssom_curator-predict-lexical command line option --port sssom_curator-web command line option --prefixes sssom_curator-import-semra command line option --proxy-fix sssom_curator-web command line option --purl-base sssom_curator-init command line option --relation sssom_curator-predict-lexical command line option --resolver-base sssom_curator-web command line option --ssl-certfile sssom_curator-web command line option --ssl-keyfile sssom_curator-web command line option --sssom-directory sssom_curator-merge command line option --strategy sssom_curator-lint command line option sssom_curator-test command line option --username sssom_curator-ndex command line option --verbose sssom_curator-predict-lexical command line option -d sssom_curator-init command line option -p sssom_curator command line option sssom_curator-import-semra command line option -pv sssom_curator-predict-lexical command line option -v sssom_curator-predict-lexical command line option

A

add_commands() (in module sssom_curator.repository) append_lexical_predictions() (in module sssom_curator.predict.lexical) (Repository method)

append_negative_mappings() (Repository method) append_positive_mappings() (Repository method) append_predicted_mappings() (Repository method) append_predictions() (in module sssom_curator.predict.lexical)

C

call_to_path (Repository attribute)

curated_paths (Repository attribute)

E

export_paths (Repository attribute)

F

filter_custom() (in module sssom_curator.predict.lexical) filter_existing_xrefs() (in module sssom_curator.predict.lexical)

from_directory() (Repository class method) from_path() (Repository class method)

G

get_app() (in module sssom_curator.web) get_cli() (Repository method)

get_converter() (Repository method) get_predictions() (in module sssom_curator.predict.lexical) get_test_class() (Repository method)

L

lexical_prediction_cli() (in module sssom_curator.predict.lexical) (Repository method)

M

model_config (Repository attribute) module sssom_curator.predict.lexical sssom_curator.repository sssom_curator.web

O

ONTOLOGY_1 sssom_curator-import-ontoportal command line option

ONTOLOGY_2 sssom_curator-import-ontoportal command line option

P

paths (Repository attribute)

predict_embedding_mappings() (in module sssom_curator.predict.lexical) predict_lexical_mappings() (in module sssom_curator.predict.lexical)

R

read_negative_mappings() (Repository method) read_positive_mappings() (Repository method) read_predicted_mappings() (Repository method)

read_unsure_mappings() (Repository method) Repository (class in sssom_curator.repository) run_cli() (Repository method)

S

SOURCE_PREFIX sssom_curator-predict-lexical command line option sssom_curator command line option --path -p sssom_curator-import-ontoportal command line option --instance ONTOLOGY_1 ONTOLOGY_2 sssom_curator-import-semra command line option --prefixes -p sssom_curator-import-url command line option URL sssom_curator-init command line option --directory --mapping-set-title --purl-base -d sssom_curator-lint command line option --strategy sssom_curator-merge command line option --sssom-directory sssom_curator-ndex command line option --password --username sssom_curator-predict-lexical command line option --all-by-all --cache --cutoff --filter-mutual-mappings --force --force-process --identifiers-are-names --method --no-cache --pin-version --relation --verbose -pv -v SOURCE_PREFIX TARGET_PREFIX

sssom_curator-summarize command line option --image-directory --output-directory sssom_curator-test command line option --strategy sssom_curator-web command line option --eager-persist --host --implementation --live-login --no-open --orcid --orcid-client-id --orcid-client-secret --port --proxy-fix --resolver-base --ssl-certfile --ssl-keyfile sssom_curator.predict.lexical module sssom_curator.repository module sssom_curator.web module

T

TARGET_PREFIX sssom_curator-predict-lexical command line option

U

update_relative_paths() (Repository method)

URL sssom_curator-import-url command line option